Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (<i>Oryza sativa</i> L.)

Zaniab Al-Shugeairy

doi:doi:10.11648/j.ijaas.20160204.12

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Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.)

Zaniab Al-Shugeairy

Published in International Journal of Applied Agricultural Sciences (Volume 2, Issue 4)

Received: 14 May 2016 Accepted: 3 June 2016 Published: 20 June 2016

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Abstract

A screen of rice genotypes was carried out on a total of 327 genotypes of the rice diversity panel for leaf vein density. Identifying locations of genes that impart to leaf vein density in a quantitative way should capable the using of these genes in plant breeding and accelerate producing C4 rice plant. Finding of genotypes of rice that have less distances between veins is still the challenge of the plant breeders. Screen was shown significant variations in leaf vein density. Quantitative trait loci (QTLs) for the leaf vein density trait were identified by using Efficient Mixed Model Analysis (EMMA). QTLs were considered reportable if they had P values (below 0.0001). The most significant Single nucleotide polymorphisms (SNP) associations (EMMA 1.3, EMMA 1.8 and EMMA 10.1) were in each of the rice chromosomes 1 and 10 respectively. All genes positioned 200 kb around associations were selected. The candidacy of the most promising were NADP-dependent malic enzyme, chloroplast precursor (LOC_Os01g09320; ras-related protein, putative, expressed (LOC_Os01g51700); 60S acidic ribosomal protein (LOC_Os01g09510); Auxin-responsive Aux/IAA gene family member (LOC_Os01g09450; myb-related transcription activator, putative, expressed (LOC_Os01g09280); glycine-rich protein (LOC_Os01g09246); phosphofructokinase (LOC_Os01g09570); oxidoreductase, short chain dehydrogenase/reductase family (SDR) LOC_Os10g31780), which have been expressed in leaf tissue and requisite to be investigated further.

Published in	International Journal of Applied Agricultural Sciences (Volume 2, Issue 4)
DOI	10.11648/j.ijaas.20160204.12
Page(s)	49-55
Creative Commons	This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.
Copyright	Copyright © The Author(s), 2016. Published by Science Publishing Group

Keywords

Rice Diversity Panel, Rice, Leaf Vein Density, Mapping

References

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Zaniab Al-Shugeairy. (2016). Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.). International Journal of Applied Agricultural Sciences, 2(4), 49-55. https://doi.org/10.11648/j.ijaas.20160204.12

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ACS Style

Zaniab Al-Shugeairy. Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.). Int. J. Appl. Agric. Sci. 2016, 2(4), 49-55. doi: 10.11648/j.ijaas.20160204.12

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Zaniab Al-Shugeairy. Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.). Int J Appl Agric Sci. 2016;2(4):49-55. doi: 10.11648/j.ijaas.20160204.12

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@article{10.11648/j.ijaas.20160204.12,
  author = {Zaniab Al-Shugeairy},
  title = {Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.)},
  journal = {International Journal of Applied Agricultural Sciences},
  volume = {2},
  number = {4},
  pages = {49-55},
  doi = {10.11648/j.ijaas.20160204.12},
  url = {https://doi.org/10.11648/j.ijaas.20160204.12},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ijaas.20160204.12},
  abstract = {A screen of rice genotypes was carried out on a total of 327 genotypes of the rice diversity panel for leaf vein density. Identifying locations of genes that impart to leaf vein density in a quantitative way should capable the using of these genes in plant breeding and accelerate producing C4 rice plant. Finding of genotypes of rice that have less distances between veins is still the challenge of the plant breeders. Screen was shown significant variations in leaf vein density. Quantitative trait loci (QTLs) for the leaf vein density trait were identified by using Efficient Mixed Model Analysis (EMMA). QTLs were considered reportable if they had P values (below 0.0001). The most significant Single nucleotide polymorphisms (SNP) associations (EMMA 1.3, EMMA 1.8 and EMMA 10.1) were in each of the rice chromosomes 1 and 10 respectively. All genes positioned 200 kb around associations were selected. The candidacy of the most promising were NADP-dependent malic enzyme, chloroplast precursor (LOC_Os01g09320; ras-related protein, putative, expressed (LOC_Os01g51700); 60S acidic ribosomal protein (LOC_Os01g09510); Auxin-responsive Aux/IAA gene family member (LOC_Os01g09450; myb-related transcription activator, putative, expressed (LOC_Os01g09280); glycine-rich protein (LOC_Os01g09246); phosphofructokinase (LOC_Os01g09570); oxidoreductase, short chain dehydrogenase/reductase family (SDR) LOC_Os10g31780), which have been expressed in leaf tissue and requisite to be investigated further.},
 year = {2016}
}

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TY  - JOUR
T1  - Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.)
AU  - Zaniab Al-Shugeairy
Y1  - 2016/06/20
PY  - 2016
N1  - https://doi.org/10.11648/j.ijaas.20160204.12
DO  - 10.11648/j.ijaas.20160204.12
T2  - International Journal of Applied Agricultural Sciences
JF  - International Journal of Applied Agricultural Sciences
JO  - International Journal of Applied Agricultural Sciences
SP  - 49
EP  - 55
PB  - Science Publishing Group
SN  - 2469-7885
UR  - https://doi.org/10.11648/j.ijaas.20160204.12
AB  - A screen of rice genotypes was carried out on a total of 327 genotypes of the rice diversity panel for leaf vein density. Identifying locations of genes that impart to leaf vein density in a quantitative way should capable the using of these genes in plant breeding and accelerate producing C4 rice plant. Finding of genotypes of rice that have less distances between veins is still the challenge of the plant breeders. Screen was shown significant variations in leaf vein density. Quantitative trait loci (QTLs) for the leaf vein density trait were identified by using Efficient Mixed Model Analysis (EMMA). QTLs were considered reportable if they had P values (below 0.0001). The most significant Single nucleotide polymorphisms (SNP) associations (EMMA 1.3, EMMA 1.8 and EMMA 10.1) were in each of the rice chromosomes 1 and 10 respectively. All genes positioned 200 kb around associations were selected. The candidacy of the most promising were NADP-dependent malic enzyme, chloroplast precursor (LOC_Os01g09320; ras-related protein, putative, expressed (LOC_Os01g51700); 60S acidic ribosomal protein (LOC_Os01g09510); Auxin-responsive Aux/IAA gene family member (LOC_Os01g09450; myb-related transcription activator, putative, expressed (LOC_Os01g09280); glycine-rich protein (LOC_Os01g09246); phosphofructokinase (LOC_Os01g09570); oxidoreductase, short chain dehydrogenase/reductase family (SDR) LOC_Os10g31780), which have been expressed in leaf tissue and requisite to be investigated further.
VL  - 2
IS  - 4
ER  -

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Zaniab Al-Shugeairy

Field Crop Department, College of Agriculture, University of Baghdad, Baghdad, Iraq

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Zaniab Al-Shugeairy. (2016). Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.). International Journal of Applied Agricultural Sciences, 2(4), 49-55. https://doi.org/10.11648/j.ijaas.20160204.12

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ACS Style

Zaniab Al-Shugeairy. Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.). Int. J. Appl. Agric. Sci. 2016, 2(4), 49-55. doi: 10.11648/j.ijaas.20160204.12

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AMA Style

Zaniab Al-Shugeairy. Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.). Int J Appl Agric Sci. 2016;2(4):49-55. doi: 10.11648/j.ijaas.20160204.12

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@article{10.11648/j.ijaas.20160204.12,
  author = {Zaniab Al-Shugeairy},
  title = {Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.)},
  journal = {International Journal of Applied Agricultural Sciences},
  volume = {2},
  number = {4},
  pages = {49-55},
  doi = {10.11648/j.ijaas.20160204.12},
  url = {https://doi.org/10.11648/j.ijaas.20160204.12},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ijaas.20160204.12},
  abstract = {A screen of rice genotypes was carried out on a total of 327 genotypes of the rice diversity panel for leaf vein density. Identifying locations of genes that impart to leaf vein density in a quantitative way should capable the using of these genes in plant breeding and accelerate producing C4 rice plant. Finding of genotypes of rice that have less distances between veins is still the challenge of the plant breeders. Screen was shown significant variations in leaf vein density. Quantitative trait loci (QTLs) for the leaf vein density trait were identified by using Efficient Mixed Model Analysis (EMMA). QTLs were considered reportable if they had P values (below 0.0001). The most significant Single nucleotide polymorphisms (SNP) associations (EMMA 1.3, EMMA 1.8 and EMMA 10.1) were in each of the rice chromosomes 1 and 10 respectively. All genes positioned 200 kb around associations were selected. The candidacy of the most promising were NADP-dependent malic enzyme, chloroplast precursor (LOC_Os01g09320; ras-related protein, putative, expressed (LOC_Os01g51700); 60S acidic ribosomal protein (LOC_Os01g09510); Auxin-responsive Aux/IAA gene family member (LOC_Os01g09450; myb-related transcription activator, putative, expressed (LOC_Os01g09280); glycine-rich protein (LOC_Os01g09246); phosphofructokinase (LOC_Os01g09570); oxidoreductase, short chain dehydrogenase/reductase family (SDR) LOC_Os10g31780), which have been expressed in leaf tissue and requisite to be investigated further.},
 year = {2016}
}

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TY  - JOUR
T1  - Rice Diversity Panel Mapping for Identifying Genetics Behind Leaf Vein Density Trait in Rice (Oryza sativa L.)
AU  - Zaniab Al-Shugeairy
Y1  - 2016/06/20
PY  - 2016
N1  - https://doi.org/10.11648/j.ijaas.20160204.12
DO  - 10.11648/j.ijaas.20160204.12
T2  - International Journal of Applied Agricultural Sciences
JF  - International Journal of Applied Agricultural Sciences
JO  - International Journal of Applied Agricultural Sciences
SP  - 49
EP  - 55
PB  - Science Publishing Group
SN  - 2469-7885
UR  - https://doi.org/10.11648/j.ijaas.20160204.12
AB  - A screen of rice genotypes was carried out on a total of 327 genotypes of the rice diversity panel for leaf vein density. Identifying locations of genes that impart to leaf vein density in a quantitative way should capable the using of these genes in plant breeding and accelerate producing C4 rice plant. Finding of genotypes of rice that have less distances between veins is still the challenge of the plant breeders. Screen was shown significant variations in leaf vein density. Quantitative trait loci (QTLs) for the leaf vein density trait were identified by using Efficient Mixed Model Analysis (EMMA). QTLs were considered reportable if they had P values (below 0.0001). The most significant Single nucleotide polymorphisms (SNP) associations (EMMA 1.3, EMMA 1.8 and EMMA 10.1) were in each of the rice chromosomes 1 and 10 respectively. All genes positioned 200 kb around associations were selected. The candidacy of the most promising were NADP-dependent malic enzyme, chloroplast precursor (LOC_Os01g09320; ras-related protein, putative, expressed (LOC_Os01g51700); 60S acidic ribosomal protein (LOC_Os01g09510); Auxin-responsive Aux/IAA gene family member (LOC_Os01g09450; myb-related transcription activator, putative, expressed (LOC_Os01g09280); glycine-rich protein (LOC_Os01g09246); phosphofructokinase (LOC_Os01g09570); oxidoreductase, short chain dehydrogenase/reductase family (SDR) LOC_Os10g31780), which have been expressed in leaf tissue and requisite to be investigated further.
VL  - 2
IS  - 4
ER  -

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