Preservation of Genetic Diversity of the Asian Native Goats

Takeshi Honda; Mayu Shibano; Hirokazu Matsumoto; Shinji Sasazaki; Kenji Oyama; Hideyuki Mannen

doi:doi:10.11648/j.avs.20170505.12

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Preservation of Genetic Diversity of the Asian Native Goats

Takeshi Honda, Mayu Shibano, Hirokazu Matsumoto, Shinji Sasazaki, Kenji Oyama, Hideyuki Mannen

Published in Animal and Veterinary Sciences (Volume 5, Issue 5)

Received: 2 August 2017 Accepted: 23 August 2017 Published: 22 September 2017

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Abstract

Using single nucleotide polymorphisms (SNPs), the relative importance of 10 subpopulations of Asian native goats in preserving genetic diversity was investigated. Analysis of prioritizing by removal of subpopulations identified the subpopulations of Mongolia (MGL), Myanmar (MYA), Cambodian plains (CAM_P), India (IND), and Philippine (PHI) as genetically important subpopulations because their removal resulted in a 6.38% reduction of expected heterozygosity. The removal of the remaining five subpopulations resulted in a 1.45% increase. Likewise, analysis using the core set method identified five subpopulations (MGL, MYA, CAM_P, IND, and PHI) as genetically important subpopulations. Among these five subpopulations, the IND was most important because of low molecular coancestry within itself and between the other subpopulations. The subpopulations of Cambodian mountainous (CAM_M) and Vietnam (VIE) were also considered to be important in this analysis. Based on these two investigations, we concluded that MGL, MYA, CAM_P, IND, and PHI are essential, and that CAM_M and VIE are worth preserving.

Published in	Animal and Veterinary Sciences (Volume 5, Issue 5)
DOI	10.11648/j.avs.20170505.12
Page(s)	69-72
Creative Commons	This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.
Copyright	Copyright © The Author(s), 2017. Published by Science Publishing Group

Keywords

Capra Hircus, Single Nucleotide Polymorphism, Molecular Coancestry, Expected Heterozygosity, Core Set Method

References

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[2]	Lin, B. Z., Odahara, S., Ishida, M., Kato, T., Sasazaki, S., Nozawa, K., Mannen, H., 2012. Molecular phylogeography and genetic diversity of East Asian goats. Anim. Genet. 44, 79-85.
[3]	Lin, B. Z., Kato, T., Kaneda, M., Matsumoto, H., Sasazaki, S., Mannen, H., 2013. Genetic diversity and structure in Asian native goat analyzed by newly developed SNP markers. Anim. Sci. J. 84, 579-584.
[4]	Waki, A., Sasazaki, S., Kobayashi, E., Mannen, H., 2015. Paternal phylogeography and genetic diversity of East Asian goats. Anim. Genet. 46, 337-339.
[5]	Caballero, A., Toro, M., 2002. Analysis of genetic diversity for the management of conserved subdivided populations. Conserv. Genet. 3, 289-299.
[6]	Nei, M., 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U. S. A. 70, 3321-3323.
[7]	Nei, M., 1987. Molecular Evolutionary Genetics. Columbia University Press, New York.
[8]	Eding, H., Crooijmans, R. P. M. A., Groenen, M. A. M., Meuwissen, T. H. E., 2002. Assessing the contribution of breeds to genetic diversity in conservation schemes. Gen. Sel. Evol. 34, 613-633.
[9]	Mucha, S., Komen, H., 2016. Rates of inbreeding and genetic adaptation for populations managed as herds in zoos with a rotational mating system or with optimized contribution of parents. J. Anim. Breed. Genet. 133, 323-332.
[10]	Gale, J. S., 1990. Theoretical Population Genetics. Unwin Hyman, London.
[11]	Pirchner, F., 1983. Population Genetics in Animal Breeding. 2nd ed. Plenum Press, New York.
[12]	Society for Researches on Native Livestock, Japan, 2009. Native Livestock in Asia. Nagoya University Press, Nagoya, Japan. (in Japanese).
[13]	Wellmann, R., Bennewitz, J., Meuwissen, T. H. E., 2014. A unified approach to characterize and conserve adaptive and neutral genetic diversity in subdivided populations. Genet. Res. 96, e16.
[14]	Biermann, A. D. M., Rommelfanger, E., Anthe, J., Frevert, H., König, S., 2016. Economic values and evaluation of breeding schemes for non-market traits with applications to an endangered pig breed. Livest. Sci. 183, 63-71.

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APA Style

Takeshi Honda, Mayu Shibano, Hirokazu Matsumoto, Shinji Sasazaki, Kenji Oyama, et al. (2017). Preservation of Genetic Diversity of the Asian Native Goats. Animal and Veterinary Sciences, 5(5), 69-72. https://doi.org/10.11648/j.avs.20170505.12

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ACS Style

Takeshi Honda; Mayu Shibano; Hirokazu Matsumoto; Shinji Sasazaki; Kenji Oyama, et al. Preservation of Genetic Diversity of the Asian Native Goats. Anim. Vet. Sci. 2017, 5(5), 69-72. doi: 10.11648/j.avs.20170505.12

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AMA Style

Takeshi Honda, Mayu Shibano, Hirokazu Matsumoto, Shinji Sasazaki, Kenji Oyama, et al. Preservation of Genetic Diversity of the Asian Native Goats. Anim Vet Sci. 2017;5(5):69-72. doi: 10.11648/j.avs.20170505.12

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@article{10.11648/j.avs.20170505.12,
  author = {Takeshi Honda and Mayu Shibano and Hirokazu Matsumoto and Shinji Sasazaki and Kenji Oyama and Hideyuki Mannen},
  title = {Preservation of Genetic Diversity of the Asian Native Goats},
  journal = {Animal and Veterinary Sciences},
  volume = {5},
  number = {5},
  pages = {69-72},
  doi = {10.11648/j.avs.20170505.12},
  url = {https://doi.org/10.11648/j.avs.20170505.12},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.avs.20170505.12},
  abstract = {Using single nucleotide polymorphisms (SNPs), the relative importance of 10 subpopulations of Asian native goats in preserving genetic diversity was investigated. Analysis of prioritizing by removal of subpopulations identified the subpopulations of Mongolia (MGL), Myanmar (MYA), Cambodian plains (CAM_P), India (IND), and Philippine (PHI) as genetically important subpopulations because their removal resulted in a 6.38% reduction of expected heterozygosity. The removal of the remaining five subpopulations resulted in a 1.45% increase. Likewise, analysis using the core set method identified five subpopulations (MGL, MYA, CAM_P, IND, and PHI) as genetically important subpopulations. Among these five subpopulations, the IND was most important because of low molecular coancestry within itself and between the other subpopulations. The subpopulations of Cambodian mountainous (CAM_M) and Vietnam (VIE) were also considered to be important in this analysis. Based on these two investigations, we concluded that MGL, MYA, CAM_P, IND, and PHI are essential, and that CAM_M and VIE are worth preserving.},
 year = {2017}
}

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TY  - JOUR
T1  - Preservation of Genetic Diversity of the Asian Native Goats
AU  - Takeshi Honda
AU  - Mayu Shibano
AU  - Hirokazu Matsumoto
AU  - Shinji Sasazaki
AU  - Kenji Oyama
AU  - Hideyuki Mannen
Y1  - 2017/09/22
PY  - 2017
N1  - https://doi.org/10.11648/j.avs.20170505.12
DO  - 10.11648/j.avs.20170505.12
T2  - Animal and Veterinary Sciences
JF  - Animal and Veterinary Sciences
JO  - Animal and Veterinary Sciences
SP  - 69
EP  - 72
PB  - Science Publishing Group
SN  - 2328-5850
UR  - https://doi.org/10.11648/j.avs.20170505.12
AB  - Using single nucleotide polymorphisms (SNPs), the relative importance of 10 subpopulations of Asian native goats in preserving genetic diversity was investigated. Analysis of prioritizing by removal of subpopulations identified the subpopulations of Mongolia (MGL), Myanmar (MYA), Cambodian plains (CAM_P), India (IND), and Philippine (PHI) as genetically important subpopulations because their removal resulted in a 6.38% reduction of expected heterozygosity. The removal of the remaining five subpopulations resulted in a 1.45% increase. Likewise, analysis using the core set method identified five subpopulations (MGL, MYA, CAM_P, IND, and PHI) as genetically important subpopulations. Among these five subpopulations, the IND was most important because of low molecular coancestry within itself and between the other subpopulations. The subpopulations of Cambodian mountainous (CAM_M) and Vietnam (VIE) were also considered to be important in this analysis. Based on these two investigations, we concluded that MGL, MYA, CAM_P, IND, and PHI are essential, and that CAM_M and VIE are worth preserving.
VL  - 5
IS  - 5
ER  -

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Author Information

Takeshi Honda

Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University, Hyogo, Japan
Mayu Shibano

Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University, Hyogo, Japan
Hirokazu Matsumoto

Laboratory of Animal Genetics, Department of Animal Science, School of Agriculture, Tokai University, Kumamoto, Japan
Shinji Sasazaki

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe, Japan
Kenji Oyama

Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University, Hyogo, Japan
Hideyuki Mannen

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe, Japan

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APA Style

Takeshi Honda, Mayu Shibano, Hirokazu Matsumoto, Shinji Sasazaki, Kenji Oyama, et al. (2017). Preservation of Genetic Diversity of the Asian Native Goats. Animal and Veterinary Sciences, 5(5), 69-72. https://doi.org/10.11648/j.avs.20170505.12

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ACS Style

Takeshi Honda; Mayu Shibano; Hirokazu Matsumoto; Shinji Sasazaki; Kenji Oyama, et al. Preservation of Genetic Diversity of the Asian Native Goats. Anim. Vet. Sci. 2017, 5(5), 69-72. doi: 10.11648/j.avs.20170505.12

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AMA Style

Takeshi Honda, Mayu Shibano, Hirokazu Matsumoto, Shinji Sasazaki, Kenji Oyama, et al. Preservation of Genetic Diversity of the Asian Native Goats. Anim Vet Sci. 2017;5(5):69-72. doi: 10.11648/j.avs.20170505.12

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@article{10.11648/j.avs.20170505.12,
  author = {Takeshi Honda and Mayu Shibano and Hirokazu Matsumoto and Shinji Sasazaki and Kenji Oyama and Hideyuki Mannen},
  title = {Preservation of Genetic Diversity of the Asian Native Goats},
  journal = {Animal and Veterinary Sciences},
  volume = {5},
  number = {5},
  pages = {69-72},
  doi = {10.11648/j.avs.20170505.12},
  url = {https://doi.org/10.11648/j.avs.20170505.12},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.avs.20170505.12},
  abstract = {Using single nucleotide polymorphisms (SNPs), the relative importance of 10 subpopulations of Asian native goats in preserving genetic diversity was investigated. Analysis of prioritizing by removal of subpopulations identified the subpopulations of Mongolia (MGL), Myanmar (MYA), Cambodian plains (CAM_P), India (IND), and Philippine (PHI) as genetically important subpopulations because their removal resulted in a 6.38% reduction of expected heterozygosity. The removal of the remaining five subpopulations resulted in a 1.45% increase. Likewise, analysis using the core set method identified five subpopulations (MGL, MYA, CAM_P, IND, and PHI) as genetically important subpopulations. Among these five subpopulations, the IND was most important because of low molecular coancestry within itself and between the other subpopulations. The subpopulations of Cambodian mountainous (CAM_M) and Vietnam (VIE) were also considered to be important in this analysis. Based on these two investigations, we concluded that MGL, MYA, CAM_P, IND, and PHI are essential, and that CAM_M and VIE are worth preserving.},
 year = {2017}
}

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TY  - JOUR
T1  - Preservation of Genetic Diversity of the Asian Native Goats
AU  - Takeshi Honda
AU  - Mayu Shibano
AU  - Hirokazu Matsumoto
AU  - Shinji Sasazaki
AU  - Kenji Oyama
AU  - Hideyuki Mannen
Y1  - 2017/09/22
PY  - 2017
N1  - https://doi.org/10.11648/j.avs.20170505.12
DO  - 10.11648/j.avs.20170505.12
T2  - Animal and Veterinary Sciences
JF  - Animal and Veterinary Sciences
JO  - Animal and Veterinary Sciences
SP  - 69
EP  - 72
PB  - Science Publishing Group
SN  - 2328-5850
UR  - https://doi.org/10.11648/j.avs.20170505.12
AB  - Using single nucleotide polymorphisms (SNPs), the relative importance of 10 subpopulations of Asian native goats in preserving genetic diversity was investigated. Analysis of prioritizing by removal of subpopulations identified the subpopulations of Mongolia (MGL), Myanmar (MYA), Cambodian plains (CAM_P), India (IND), and Philippine (PHI) as genetically important subpopulations because their removal resulted in a 6.38% reduction of expected heterozygosity. The removal of the remaining five subpopulations resulted in a 1.45% increase. Likewise, analysis using the core set method identified five subpopulations (MGL, MYA, CAM_P, IND, and PHI) as genetically important subpopulations. Among these five subpopulations, the IND was most important because of low molecular coancestry within itself and between the other subpopulations. The subpopulations of Cambodian mountainous (CAM_M) and Vietnam (VIE) were also considered to be important in this analysis. Based on these two investigations, we concluded that MGL, MYA, CAM_P, IND, and PHI are essential, and that CAM_M and VIE are worth preserving.
VL  - 5
IS  - 5
ER  -

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